http://ws.g-language.org/wiki/ 2009-04-16T17:01:31+09:00 http://ws.g-language.org/wiki/ http://ws.g-language.org/wiki/lib/images/favicon.ico text/html 2009-04-02T20:13:26+09:00 gaou http://ws.g-language.org/wiki/software?rev=1238670806&do=diff lightweight version * Bio::Glite (available at CPAN) This is a lightweight API version (i.e. w/o Shell or other interfaces) utilizing G-language REST web service. The source code is less than 100KB, requires very limited amount of RAM/CPU usage. Installation is very simple using cpan: text/html 2009-04-01T23:03:04+09:00 gaou http://ws.g-language.org/wiki/rest?rev=1238594584&do=diff Base URL * <http://rest.g-language.org/> * <http://useG.jp/> (this URL forwards to the above) genome flatfile access list of available genomes * <http://rest.g-language.org/organism_list/> Syntax http://rest.g-language.org/[genome]/[gene]/[feature] text/html 2009-04-01T15:36:42+09:00 gaou http://ws.g-language.org/wiki/sidebar?rev=1238567802&do=diff * Home * Software / Download * Changelogs * Mailing Lists * Development * Screenshots * REST Web Service * Documentations * AJAX Document Center * Publications * Posters * Gallery * Institute for Advanced Biosciences * GEM System * GenomeProjector * Microarray Visualization System * MEGU:Pathway Visualization System * Restauro-G:Reannotation System * cDNA Analysis Package * SPLITS:tRNA search for Archaea * E-Cell Simulation Environment *… text/html 2009-03-30T22:57:11+09:00 gaou http://ws.g-language.org/wiki/publications?rev=1238421431&do=diff Book about G-language System * "Learning Bioinformatics with Open Source Software", (in Japanese), Japan Open Bioinformatics Research Group, Tokyo Denki University Press, 2008, (ISBN4501622601) Amazon.co.jp. Publication about G-language System * "G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining", Arakawa K, Mori K, Ikeda K, Matsuzaki T, Kobayashi Y, Tomita M, Bioinformatics, 2003, 19(2):305-306 (PubMed) text/html 2009-03-27T13:46:26+09:00 admin http://ws.g-language.org/wiki/soap?rev=1238129186&do=diff Base URL * <http://soap.g-language.org/g-language.wsdl> Usage examples in different programming languages Perl use SOAP::Lite; hogehoge Ruby require soap Python import SOAP.py; Java import hogehoge; MyExperiment and Taverna text/html 2009-03-26T23:34:45+09:00 gaou http://ws.g-language.org/wiki/home?rev=1238078085&do=diff The G-language Genome Analysis Environment is a generic genome analysis environment aiming to: * Construct an integrated environment for the development of analysis software. * Systematically accumulate existing analysis software methodologies for analysis and their results. * Construct generic analysis packages that allow users to avoid redundancy in the process of analysis.